Tagged questions

reconstruction/ run.local

0 0 2k
answers votes views
In the reconstruction part of NMRPipe processing, when I run the command './run.local' the message below appears in the ...
Posted: julianima 1 Apr 12 '18 at 11:52

Backbone assignment with NMRPipe

1 0 3k
answers votes views
Hi I'm new to nmrPipe and I have a question about where to start assigning the backbone resonances for a recombinant pro...
Posted: David Onofrei 3 / Updated: Woonghee 26 Nov 28 '16 at 16:37

What do -di and -verb do?

1 0 2k
answers votes views
Hi all, New to NMRPipe. I'm trying to understand what the arguments -di and -verb to, e.g. in |nmrPipe -fn PS -p0 66.0...
Posted: Lena 1 / Updated: Kirk Marat 711 Sep 06 '16 at 11:23

NUS nmrPipe

0 0 1k
answers votes views
Hi, I have recently written a 2D-HSQC pulse program (Echo-AntiEcho detection) which records non-uniformly sampled data ...
Updated: Zolo 1 Oct 20 '15 at 13:53

How to edit format of Variables in NMRPipe?

0 0 1k
answers votes views
Dear all, I would like to change the number of decimal place for the X and Y ppm values in nmrdraw (peak detection). The...
Posted: Jerry J 1 Aug 18 '15 at 14:37

How do I perform a 2D C-13-C-13 spectrum simulation?

0 0 1k
answers votes views
I am new to NMR pipe and was wondering how to perform a carbon-13 carbon-13 simulation in NMR pipe? For example, what th...
Posted: epsaliba 1 Feb 06 '15 at 07:28

Tool for Subsampling Uniformly-Acquired Data to Mimic NUS Spectra

1 0 7k
answers votes views
Hello all, I have several 2D and 3D data sets acquired using Bruker spectrometers in the standard uniform sampling fash...
Updated: ChemMJW 99 Aug 23 '14 at 20:43

simulate 3D NOESY

1 0 4k
answers votes views
Hello everyone I am using NMRPipe to simulate 3D, noise-free NOESY spectra (13C or 15N resolved) from peak lists, but I...
Updated: canavanin 17 Mar 19 '14 at 05:17

Varian FIDs ordering: Inner and outer loop in the sequence(Rance-Kay & States)?

1 0 13375
answers votes views
Dear all, I am new to NMR and I have difficulty understanding the ordering of FIDs, e.g. if an experiment uses both Ran...
Updated: nmr2rmn 3 Mar 27 '13 at 02:12

window resizing issues with nmrDraw on Ubuntu 12.04

0 0 2k
answers votes views
Hi all, I upgraded to Ubuntu 12.04 and reinstalled nmrpipe. Everything works well - except that when I resize the nmrDr...
Posted: Kaustubh 21 Sep 15 '12 at 18:33

NMRPipe: propagating resonance positions to multiple spectra

1 0 4k
answers votes views
Hello, Is it possible in NMRPipe to: Generate a peak table for a new spectrum using the resonance positions in an exi...
Updated: vvostri 11 Aug 23 '11 at 13:58

NMRPipe: re-integrate peaks

1 1 4k
answers votes views
Hello, I am familiarizing myself with NMRPipe and I have a question similar to the one already asked (http://qa.nmrwiki...
Updated: vvostri 11 Jun 14 '11 at 09:54

converting nmrpipe processed data (.ft3 files) to felix matrix

1 1 5k
answers votes views
I am trying to convert the .ft3 files into a felix matrix using the pipe2mat conversion filter in felix but it doesn't s...
Updated: Kaustubh 21 Dec 13 '10 at 22:59

How to do a Shearing Transform in nmrPipe?

0 1 3k
answers votes views
Hi, In want to do a shearing transform of 2Q-1Q correlation spectra into a 1Q-1Q type projection. This is possible in NM...
Posted: Santy 11 / Updated: Evgeny Fadeev 5771 Jan 05 '11 at 10:18

what is different between nmrpipe and topspin softwares

2 1 7k
answers votes views
hi, i am new user to nmrpipe i want to know how this nmrpipe differs with topspin 2.1 software because when i use same p...
Posted: saship21 21 / Updated: Ganesh 21 Apr 18 '11 at 03:51

How to process and analyze serial 1D data nmrPipe?

3 1 9k
answers votes views
Hi all, I am very new to nmrPipe. I want to achieve the following steps. It would be very kind if somebody helps. I hav...
Posted: RSnmr 11 / Updated: Evgeny Fadeev 5771 Oct 28 '10 at 09:44

How to fix the broad antiphase artifact after SOL function in nmrPipe?

2 0 8k
answers votes views
Hi, we've tried to apply SOL function of nmrPipe to process a 3D 13C edited NOESY. and the result is a wide antiphase-lo...
Posted: Evgeny Fadeev 5771 / Updated: sekhar Talluri 621 Apr 26 '11 at 11:04

What software can copy peak assignments for 2D T1 and T2 relaxation rate data analysis?

9 1 11707
answers votes views
Hello, I'm currently processing a large amount of T1 and T2 spectra in NMRDraw. I've been looking for a way to copy my ...
Posted: ccantr10 11 / Updated: Marcos 21 Sep 09 '10 at 10:09

NMRPipe: Why Varian States-TPPI NMR data is to be processed with -yMode Complex?

1 0 8k
answers votes views
Hello, I've started using Varian instrument at UCI two years ago and I use nmrPipe to process the data. This one thing ...
Posted: Evgeny Fadeev 5771 / Updated: Clemens Anklin 416 Jun 06 '10 at 15:14

gNhsqc_IPAP RDC data processing

3 2 5k
answers votes views
Does anyone know how, or have a resource that can assist me in processing data collected from this experiment? Thanks. ...
Posted: Elio Cino 31 / Updated: Evgeny Fadeev 5771 Mar 04 '10 at 07:28

Is it possible to run nmrPipe on Microsoft Windows?

1 0 8k
answers votes views
Hello, I'd like to be able to run nmrPipe on windows - under cygwin or something like that. Has this been done before? ...
Posted: Evgeny Fadeev 5771 / Updated: uab_nmr 46 Feb 26 '10 at 04:54

A puzzle about NMRPipe COADD with -time option.

0 1 4k
answers votes views
... Following up on a previous question about processing interleaved gNhsqc_IPAP.c data where IP/AP is on the inner loop...
Updated: Evgeny Fadeev 5771 Jan 15 '10 at 16:49

How to process gNhsqc_IPAP.c data with nmrPipe?

2 0 12673
answers votes views
Hello, I know that this problem has been discussed a number of times on the nmrPipe newsgroup and there are some helpfu...
Updated: Evgeny Fadeev 5771 Mar 03 '10 at 13:11

ASCII to nmrPipe format conversion of 2D complex time domain data

1 2 6k
answers votes views
I have a 2D complex time domain set stored in ASCII format. I want to be able to process it using nmrPipe. Unfortunately...
Posted: hasancelik 48 / Updated: Evgeny Fadeev 5771 Dec 10 '09 at 07:01
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