Unanswered questions

Data processing and Sparky

2 0 6k
answers votes views
Dear NMRWikiers, I'm fresh in nmr field and would like to ask couple questions: 1. Our protein has about 132 residues.Th...
Posted: John Leehono 1 / Updated: Justin Frank 1 Jun 29 '16 at 19:44

RDC gel preparation

3 0 8k
answers votes views
I have seen many different protocols on making acrylamide gels for RDC measurements which include usually one of the fol...
Posted: andrewL 1 / Updated: Andrew Fowler 96 Apr 24 '13 at 07:06

Anyone interested in consulting/contracting for a Nucleic Acid/Oligonucleotide NMR project in the Boston Area?

0 0 4k
answers votes views
Instrument is a Varian and it would be a long term consultancy/contract. Possibility for direct Hire. Please direct res...
Posted: Eric Celidonio 1 Jan 20 '12 at 15:45

13C NMR of sulfated galactose

0 0 2k
answers votes views
Hi everybody, Has anyone ever seen a C-6 at 64 ppm in the 13C NMR spectrum of a sulfated galactose? ...
Posted: nvgramosa 11 Jan 16 '12 at 18:27

demo experiments for NMR "wet lab"?

1 0 4k
answers votes views
Hi all, I've been asked to give a "wet lab" tutorial on NMR -- the audience is a mixture of chemists, biologists, and b...
Posted: Rachel Smith 1 / Updated: John Witte 1 Jan 07 '12 at 19:29

Problem while genrating the constraints form N-15 edit AND C-13 EDIT NOESY files

1 0 3k
answers votes views
I am encountering the problem while generating the constraints form N-15 edit AND C-13 EDIT NOESY files that very few c...
Posted: sri 71 / Updated: sekhar Talluri 621 Jan 15 '12 at 11:19

bulk water relaxation dependence on temperature

2 1 6k
answers votes views
Is liquid water's relaxation rate strongly dependent on temperature, and does anyone have a link to a good online articl...
Posted: plshelp 11 / Updated: sekhar Talluri 621 Jan 15 '12 at 09:58

Auto peak picking of N15Edit NOESY and C13 Edit NOESY spectrum

1 0 3k
answers votes views
Dear friends, I am in process of doing structure calculation of a dimeric protein. The problem I faced is regarding the...
Posted: Arun Gupta 11 / Updated: Eugene DeRose 41 Dec 16 '11 at 08:01

Odd distortion in HOD peak in 1D DOSY (stebpgp1s)

2 1 5k
answers votes views
I have a small distortion in the HOD peak in my 1D DOSY spectra. However, it only occurs for the HOD signal and no other...
Updated: cyg 36 Jan 03 '12 at 21:45

halt command in topspin 3

1 1 6k
answers votes views
Hello all nmr wikier last week we have upgraded software topspin2.1 to topspin3 on bruker av400 machine.when we use halt...
Posted: feroon 21 / Updated: Evgeny Fadeev 5771 Dec 06 '11 at 11:09

How do you build an NMR power amplifier?

1 0 5k
answers votes views
And how to you match it to the NMR coil? Basically I'm looking to perform NMR experiments with frequencies in the 500KH...
Posted: Homer Garfield 1 / Updated: lbeezley 1 Mar 25 '12 at 08:37

demonstrative kinetics experiment

2 0 5k
answers votes views
I'm looking for a good kinetics experiment to run in the lab section of our graduate lab course. It should be a reaction...
Posted: jkurutz 131 / Updated: sekhar Talluri 621 Dec 03 '11 at 13:32

what went wrong?

2 0 3k
answers votes views
a query again? I recorded an DQF on deuterated solid sample. The basic pulse programme taken from bruker, optimised the...
Updated: anup chowdhury 1 Nov 21 '11 at 07:34

13C E.COSY

0 0 9k
answers votes views
Can somebody help me with the one query? How to record an E.COSY for solids proteins? Its possible to use available prog...
Posted: anup chowdhury 1 Nov 18 '11 at 04:23

Method for indirect 13C-1H J-couplings measurements

5 1 7k
answers votes views
Dear colleagues! 13C-1H J-couplings are essential in some areas of molecule structure research. I discovered modern met...
Updated: VVK 61 Nov 29 '11 at 12:37

EBURP-2 wavelib shape pulse file for varian

2 0 5k
answers votes views
Can somebody please send the EBURP-2 wavelib file for VNMR? Thanks! AL ...
Posted: Avigdor Leftin 1 / Updated: jinghere 11 Nov 13 '11 at 23:18

c13 edit noesy phasing problem

3 1 5k
answers votes views
Dear NMR Wiki'ers I Have acquired c13-edit noesy experiment on 700vnmr for my target protein (20kd) with mixing time of...
Posted: sri 71 / Updated: Justin Frank 1 Jun 29 '16 at 19:48

Spectra from BMRB Chemical shifts

4 0 9k
answers votes views
Is it possible to generate a spectrum from BMRB chemical shifts? I want to generate a spectrum to use as a reference fo...
Posted: Andreas 1 / Updated: delaglio 1361 Dec 11 '11 at 14:15

poor signal to noise on 1H-15N heteronculear NOE

2 0 4k
answers votes views
I have recently attempted to run a 1H-15N heteronuclear NOE experiment in vnmrj (700 rt probe) using the standard sequen...
Updated: Thomas Garner 81 Nov 09 '11 at 08:48

Protein-peptide binding NMR Experments

2 0 8k
answers votes views
Hello friends , my target Protein is existing as multimer (i.e Monomer,dimer,tetrameter ) before binding to the peptid...
Posted: sri 71 / Updated: Justin Frank 1 Jun 27 '16 at 03:02

shake routine and ncon parameter

0 0 1k
answers votes views
Trying to do molecular dynamics with explicit water molecules I came across a problem with SHAKE routine: shake ...
Posted: zltn 1 Oct 27 '11 at 13:51

Using CYANA and ARIA to caluclate structure of protein

2 0 4k
answers votes views
Could you please describe about advantages of CYANA2.1 and ARIA1.2 software to calculate the structure of protein ? w...
Updated: sri 71 Oct 28 '11 at 03:01

relation of T2 relaxation time to gradient strengths

0 0 1k
answers votes views
to detect short T2 NMR relaxation time, we use high gradient strengths. but how? what is the relation? what is the mecha...
Posted: shanthi pagadala 1 Oct 21 '11 at 01:19

Transfering programs from varian INOVA to VNMRS

3 0 6k
answers votes views
I have pulse programs which work great on our varian INOVA instruments, but when I transfer them to varian VNMRS I get e...
Updated: mikaelastewart 11 Nov 02 '11 at 08:15

Problem running spincad (vnmrj command)

1 1 4k
answers votes views
When I try to launch the spincad utility in the command line of VNMRJ v. 2.2c I get the following error: Error in start...
Updated: dkubicki 11 Nov 01 '11 at 11:26

unusual tyrosine cross peaks

3 1 5k
answers votes views
Hi I am observing some unexpected cross peaks in some homonuclear protein data and I was wanting to know if anyone had a...
Posted: Thomas Garner 81 / Updated: james han 1 Aug 01 '16 at 21:28

Simple 1H-NMR Assignment Query

4 1 5k
answers votes views
Hi guys, sorry to be really cheeky and sign up simply to ask for help, but here goes. I've done a simple Grignard addit...
Posted: Brianstorm 11 / Updated: 3nath 11 Oct 26 '11 at 12:53

Problem with the gradient shimming

4 0 8k
answers votes views
Dear Friends, I've recently encountered a problem with gradient shimming that has never happened to me before. I can't ...
Posted: dkubicki 11 / Updated: Charlie Fry 91 Nov 16 '12 at 09:02

Side chain assignment of C-terminal residue

2 0 4k
answers votes views
Dear Friends, I am not able to figure out how to determine the side chain assignment of Last C-terminal SERINE residue...
Posted: Arun Gupta 11 / Updated: Andrew Fowler 96 Oct 11 '11 at 09:24

Tuning and matching problem on atma command

0 0 5k
answers votes views
hello nmr wikier I am using Z-gradiant BBI probe on bruker AV-500 since last weak I am facing tuning and matching proble...
Posted: feroon 21 Oct 05 '11 at 08:16
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