Tagged questions

How does pipe estimates Haight and DHeight?

4 1 1k
answers votes views
I`m new on Pipe. I was using the values from pipe to estimate R1 and R2. Because lots of signal in the HSQC were crowded...
Updated: Marcos 21 Jul 02 '10 at 10:55

How to create synthetic procpar files for VNMRJ?

2 2 3k
answers votes views
Hi guys : Im trying to make a procpar for an FID, I know most of the parameters of importance, and have the schema of th...
Posted: j 131 / Updated: David Horita 31 Nov 09 '12 at 06:43

MODULE for RDC

2 1 2k
answers votes views
I'm trying to analyze my RDC data using Module. But I'm using a crystal structure instead of NMR. Can somebody pls advis...
Posted: shub 31 / Updated: Evgeny Fadeev 5571 Jul 28 '10 at 11:09

How to open multiple pdb files with PyMol - all at once?

3 0 8k
answers votes views
Hello, I've started using PyMol for looking at the bundles of NMR structures. You can open files one-by-one, but it's ki...
Posted: Evgeny Fadeev 5571 / Updated: dummy2 1 Apr 05 '13 at 07:03

Is there a tool to manage NOE and other restraint lists for the structure calculations?

1 0 2k
answers votes views
Hello, I'm currently working on solving a peptide NMR solution structure using NIH-XPLOR. I find myself a lot starting ...
Posted: Evgeny Fadeev 5571 / Updated: Ilango 171 Apr 02 '10 at 05:45

Software to model a 9-mer peptide that binds divalent metals and may oligomerize?

1 1 3k
answers votes views
I'm gearing up for a project in which we're looking at the structure of a short peptide that should fold upon binding di...
Posted: jkurutz 111 / Updated: Evgeny Fadeev 5571 Mar 18 '10 at 09:32

Is there a script that converts Sparky .list files to XPLOR input format?

1 1 2k
answers votes views
I have 5 different RDCs that I've extracted using simple perl scripts and Sparky .list files. I want to use XPLOR for s...
Posted: mikaelastewart 11 / Updated: Evgeny Fadeev 5571 Mar 15 '10 at 14:37

How to fix error code 9 when running modelfree?

3 2 5k
answers votes views
Guys-has any one used fastMF program from Loria's group? I am getting an error message - "Error during input, file= 6mar...
Posted: Jeetender Chugh 31 / Updated: Daisuke Takahashi 1 Sep 08 '11 at 18:35

How do you determine error on the peak position?

2 0 3k
answers votes views
Hello, could anyone suggest a method to determine error (maybe standard deviation or some other estimate) of a peak posi...
Posted: Evgeny Fadeev 5571 / Updated: sekhar Talluri 601 Mar 14 '10 at 08:46

Are there tools that automate obtaining RDC values and accuracy from NMR data?

2 1 2k
answers votes views
Hello. I was wondering if there are any software programs to extract RDC values, and their associated errors from proces...
Posted: Elio Cino 31 / Updated: bernie o'hare 111 Mar 13 '10 at 10:30
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