2D pulse sequences for NMR of protein/peptide complexes?

0 1 3k
answers votes views
Hello, I am looking for some 15N/13C-filtered 2D NOESY and 2D TOCSY pulse sequences to run on a Varian 600. Does anyone ...
Posted: acalab 21 / Updated: Evgeny Fadeev 5771 Jul 26 '10 at 09:25

Looking for sample spectra....

2 1 6k
answers votes views
Hi guys : Is there a public database of sample Bruker/Varian NMR spectra ? I want to look at a sample 4D SER file ......
Posted: j 131 / Updated: Evgeny Fadeev 5771 Jul 07 '10 at 14:41

How does pipe estimates Haight and DHeight?

4 1 5k
answers votes views
I`m new on Pipe. I was using the values from pipe to estimate R1 and R2. Because lots of signal in the HSQC were crowded...
Updated: Marcos 21 Jul 02 '10 at 10:55

Is there a way to reduce on-carrier solvent artifact in States-TPPI?

1 0 9k
answers votes views
Here is a TOCSY recorded with States-TPPI method on a sample in 10/90 D2O/H2O. States-TPPI is expected to move the "ho...
Posted: Evgeny Fadeev 5771 / Updated: sekhar Talluri 621 Jul 10 '10 at 19:00

Why this gradient shim map is jumpy at edges?

1 0 7k
answers votes views
Hello, I've been trying to create a gradient shim map (shown in figure below) on a standard 5 mM tube on D2O (10% D2O/H2...
Posted: Evgeny Fadeev 5771 / Updated: Kirk Marat 711 Jul 03 '10 at 08:22

What is the minimum information required to calculate a structure with cyana?

1 1 8k
answers votes views
Hi guys : I have several spectra, and wanted to test out what data I do , and do not need, in order to effectively get a...
Posted: j 131 / Updated: Bharathwaj 112 Jun 28 '10 at 19:43

Chemical shift and spin rate

2 1 5k
answers votes views
For solid state NMR: What can cause the line position shift depending on the spin rate? ...
Posted: KateSTR 11 / Updated: Evgeny Fadeev 5771 Jun 21 '10 at 19:12

What does tcu error in bruker mean: ignored AQNEXT, busy FIFO is stopped?

1 0 10989
answers votes views
Has any one seen this type of error before? tcu error: Error in 'hsqcrexetf3gpsi3d.t22.d': line 92 (pc=50, ld=2300): - ...
Posted: Jeetender Chugh 31 / Updated: Ilango 171 Jul 09 '10 at 11:45

Why RF irradiation will damage amplifier?

3 1 17390
answers votes views
Here our 1H amplifier of NMR spectrometer is damaged twice for long time or high power RF irradiation. Why the duty cyc...
Posted: Frey 61 / Updated: lbeezley 1 Mar 15 '11 at 08:37

What is the origin of positive and negative coupling constants in NMR?

1 2 24316
answers votes views
When positive and negative coupling constants occur in NMR? and why? What are the spin states of the nuclei and the bond...
Posted: Ligia 21 / Updated: sekhar Talluri 621 Jun 13 '10 at 05:47

Can adamantane condense in a rotor of a solids probe?

1 0 5k
answers votes views
Hi, does anyone ever get adamantane from the rotor sublimate and condense outside it? A student here found a suspiciou...
Posted: Evgeny Fadeev 5771 / Updated: Joseph DiVerdi 146 May 31 '10 at 06:25

How to make single page plots of arbitrary size in SPARKY?

0 0 3k
answers votes views
Hi, I need to plot a 2D spectrum so that it is 20cm wide (and tall) in sparky. Using pt command I can set up ppm/cm acc...
Updated: Evgeny Fadeev 5771 May 27 '10 at 13:46

How to create synthetic procpar files for VNMRJ?

2 2 8k
answers votes views
Hi guys : Im trying to make a procpar for an FID, I know most of the parameters of importance, and have the schema of th...
Posted: j 131 / Updated: David Horita 31 Nov 09 '12 at 06:43

MODULE for RDC

2 1 6k
answers votes views
I'm trying to analyze my RDC data using Module. But I'm using a crystal structure instead of NMR. Can somebody pls advis...
Posted: shub 31 / Updated: Evgeny Fadeev 5771 Jul 28 '10 at 11:09

BRUKER Fid data ordering

2 2 17193
answers votes views
Hi guys : This post is related to : qa.nmrwiki.org/question/83/where-to-find-technical-information-on-varian-and-bruke...
Updated: j 131 May 25 '10 at 11:45

Eliminating NOE restraints

1 1 6k
answers votes views
I have collected over 370 NOE restraints for a 38 AA peptide. Because I have less than 10 restraints per residue, I am ...
Posted: E V Clarke 11 / Updated: sekhar Talluri 621 May 23 '10 at 12:18

How to reference indirect dimensions in Topspin?

0 1 5k
answers votes views
Hello, When I process 3d data on topspin with the ft3d command, I get the three-dimensional spectra, but the chemical sh...
Posted: Gili 11 / Updated: Evgeny Fadeev 5771 Jul 26 '10 at 09:24

How to configure vnmr to save postscript files

1 0 6k
answers votes views
Hello, I know I've done this before but did not write the details down. How to make vnmr save postscript files? Normall...
Posted: Evgeny Fadeev 5771 / Updated: Gareth Morris 71 May 13 '10 at 01:28

How to remove baseline DC offset in Bruker EMX EPR spectra?

1 0 5k
answers votes views
Hello, I've noticed recently that our EPR spectrometer (Bruker EMX500) has a negative offset on the baseline and it bec...
Posted: Evgeny Fadeev 5771 / Updated: Alex Blumenfeld 11 May 12 '10 at 11:55

Why chiral(-*C-)centre attached Ethylene(-CH2-)group splits into two separate protons(or)peaks ?

1 1 5k
answers votes views
About chiral centre ...
Posted: RAM 21 / Updated: Evgeny Fadeev 5771 May 01 '10 at 17:48

How to determine E vz Z olefin isomer when proton resonances orverlap?

3 1 17140
answers votes views
We have an olefin, R1-CH=CH-R2 where proton resonances overlap. Is there a way to determine olefin isomer - E (trans) vs...
Posted: Evgeny Fadeev 5771 / Updated: Cleber Barreto 73 Jul 10 '10 at 08:07

How to best correlate Deuterium with other nuclei by NMR?

2 0 6k
answers votes views
Hello, I've been asked to solve a problem of assigning a positon of deuteration on a molecule, where structure of the de...
Posted: Evgeny Fadeev 5771 / Updated: kiscs kiscs 21 May 17 '10 at 16:43

How to determine physical orientation of X and Y shims?

2 0 5k
answers votes views
Hello, I need to help solids lab at our UCI site - they have a custom probe and need to orient it properly in order to e...
Posted: Evgeny Fadeev 5771 / Updated: Jerry Hirschinger 199 Sep 13 '10 at 08:46

Limit Testing by NMR?

3 1 10419
answers votes views
Is it possible to use NMR for limit testing of trace impurities in pharmaceutical drug substances? What are the conside...
Posted: Chris Kirchner 11 / Updated: sekhar Talluri 621 May 23 '10 at 11:49

How to assign (perturbed) resonances when structure is known?

1 0 6k
answers votes views
I had two problems like this one recently: have protein (in solution) of known general structure resonance assignments...
Posted: Evgeny Fadeev 5771 / Updated: Aleksandr Yakimov 11 Apr 25 '10 at 01:17

How to confirm structure of propane by NMR?

2 2 5k
answers votes views
I will really need your help. I am chemist working in the oil buisness and I am interesting is it possible to analyze pr...
Posted: Silvija 21 / Updated: ron daedalus 11 Apr 21 '10 at 09:18

How to explain binary-like pattern in the nutation curve in a simple 90 degree pulse calibration experiment?

1 0 9k
answers votes views
Hello, I wanted to ask this in a while. Finally a sample arrived that shows this behavior and I made a screenshot (below...
Posted: Evgeny Fadeev 5771 / Updated: Joseph DiVerdi 146 Apr 15 '10 at 17:23

Why are my acetic acid-d4 solvent peaks off from the expected ppm value?

1 1 9k
answers votes views
Hello there. After running an 1H-NMR experiment I observed the acetic acid-d4 solvent peaks at 11.54 and 21.16 ppm (off...
Posted: BONA 11 / Updated: Evgeny Fadeev 5771 Apr 12 '10 at 15:08

How to determine the conformation of cis-cyclohexyl derivative by NMR?

1 1 5k
answers votes views
This cis-cyclohexyl derivative with two big substitutes (A and B) may has two conformational isomers, 1 and 2. How to ...
Posted: Jack 31 / Updated: Evgeny Fadeev 5771 Apr 05 '10 at 12:36

What is the definition of term Saturation and what are ways to achieve that state?

2 1 24413
answers votes views
Hello. What is the best definition to the state of "saturation" in the context of NMR? No phase coherence in the transv...
Posted: Evgeny Fadeev 5771 / Updated: Joseph DiVerdi 146 Apr 06 '10 at 20:44
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