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posted Mar 03 '10 at 07:10

Elio%20Cino's gravatar image

Elio Cino
31

gNhsqc_IPAP RDC data processing

Does anyone know how, or have a resource that can assist me in processing data collected from this experiment? Thanks.

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posted Mar 03 '10 at 09:47

Evgeny%20Fadeev's gravatar image

Evgeny Fadeev
5771

gNhsqc_IPAP RDC data processing

Does anyone know how, or have a resource that can assist me in processing data collected from this experiment? Thanks.

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No.2 Revision

posted Mar 03 '10 at 14:01

Evgeny%20Fadeev's gravatar image

Evgeny Fadeev
5771

gNhsqc_IPAP RDC data processing

Does anyone know how, or have a resource that can assist me in processing data collected from this experiment? Thanks.

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No.3 Revision

posted Mar 04 '10 at 05:29

Elio%20Cino's gravatar image

Elio Cino
31

gNhsqc_IPAP RDC data processing

Does anyone know how, or have a resource that can assist me in processing data collected from this experiment? Thanks.

I managed to get a single spectra using a new processing script from the nmrpipe manual:

nmrPipe -in test.fid \ | nmrPipe -fn POLY -time \ | nmrPipe -fn SP -off 0.5 -end 0.95 -pow 1 -c 1 \ | nmrPipe -fn ZF -auto \ | nmrPipe -fn FT -auto \ | nmrPipe -fn PS -p0 -12.4 -p1 0.0 -di -verb \ | nmrPipe -fn EXT -left -sw \ | nmrPipe -fn TP \ | nmrPipe -fn COADD -cList 0 1 -time \ | nmrPipe -fn SP -off 0.5 -end 0.95 -pow 1 -c 1 \ | nmrPipe -fn ZF -auto \ | nmrPipe -fn FT -auto \ | nmrPipe -fn PS -p0 0.0 -p1 0.0 -di -verb \ -ov -out B.ft2

The spectra looks ok, but the peak intensities seems weaker than they should be. Anyways, next I have to figure out how to get rdc values of of this data...more reading I guess haha.

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No.4 Revision

posted Mar 04 '10 at 07:28

Evgeny%20Fadeev's gravatar image

Evgeny Fadeev
5771

gNhsqc_IPAP RDC data processing

Does anyone know how, or have a resource that can assist me in processing data collected from this experiment? Thanks.

edit: I managed to get a single spectra using a new processing script from the nmrpipe manual:

nmrPipe -in test.fid \
| nmrPipe -fn POLY -time                           \
| nmrPipe -fn SP -off 0.5 -end 0.95 -pow 1 -c 1    \
| nmrPipe -fn ZF -auto                             \
| nmrPipe -fn FT -auto                             \
| nmrPipe -fn PS -p0 -12.4 -p1 0.0  -di -verb       \
| nmrPipe -fn EXT -left -sw                        \
| nmrPipe -fn TP                                   \
| nmrPipe -fn COADD -cList 0 1 -time               \
| nmrPipe -fn SP -off 0.5 -end 0.95 -pow 1 -c 1    \
| nmrPipe -fn ZF -auto                             \
| nmrPipe -fn FT -auto                             \
| nmrPipe -fn PS -p0 0.0 -p1 0.0 -di -verb         \
          -ov  -out B.ft2

B.ft2

The spectra looks ok, but the peak intensities seems weaker than they should be. Anyways, next I have to figure out how to get rdc values of of this data...more reading I guess haha.

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