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posted Feb 02 '11 at 04:23

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Paul Driscoll
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Depends on exchange rate: If fast/intermediate exchange then look for differential line-broadening in peptide spectrum when peptide is in excess. If slow exchange then might need to isotope label the peptide to see which resonances are shifted and/or broadened. In this context it helps to know the binding affinity by some orthoganol method. With a 'receptor' of only 11 kDa it might be possible to filter the spectrum to see bound peptide chemical shifts (assuming the 11kDa is isotope labelled).
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posted Feb 02 '11 at 04:23

Paul%20Driscoll's gravatar image

Paul Driscoll
81

Depends on exchange rate:

If fast/intermediate exchange then look for differential line-broadening in peptide spectrum when peptide is in excess. If slow exchange then might need to isotope label the peptide to see which resonances are shifted and/or broadened. In this context it helps to know the binding affinity by some orthoganol method. With a 'receptor' of only 11 kDa it might be possible to filter the spectrum to see bound peptide chemical shifts (assuming the 11kDa molecule is isotope labelled).

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