Revision history - NMR Wiki Q&A Forum

1

initial version

posted Nov 01 '10 at 07:26

For the solvent suppression nmrPipe has these commands: nmrPipe -fn SOL #low frequency digital filter nmrPipe -fn POLY -time #polynomial baseline correction in time domain For the phasing, there is a way to run scripts from `nmrDraw`. For me typing the phase values directly into the script works better. I have a default script where phase parameters are set to 0, then I run the script, adjust the phase in nmrDraw, copy the values into the script and re-run it. Then usually some more adjustment will be needed, most likely just small corrections where it's easy to add/subtract the values and re-run the processing again.

2

No.1 Revision

posted Nov 01 '10 at 07:28

Evgeny Fadeev
577●1

For the solvent suppression nmrPipe has these commands:

nmrPipe -fn SOL #low frequency digital filter
nmrPipe -fn POLY -time #polynomial baseline correction in time domain

For the phasing, there is a way to run scripts from nmrDraw~~. For~~ (the companion display program) but for me typing the phase values directly into the script works better. I have a default script where phase parameters are set to 0, then I run the script, adjust the phase in nmrDraw, copy the values into the script and re-run it. Then usually some more adjustment will be needed, most likely just small corrections where it's easy to add/subtract the values and re-run the processing again.

3

No.2 Revision

posted Nov 01 '10 at 07:31

Evgeny Fadeev
577●1

For the solvent suppression nmrPipe has these commands:

nmrPipe -fn SOL #low frequency digital filter
nmrPipe -fn POLY -time #polynomial baseline correction in time domain

For the phasing, there is a way to run scripts from nmrDraw (the companion display program) but for me typing the phase values directly into the script works better. I have a default script where phase parameters are set to 0, then I run the script, adjust the phase in nmrDraw, copy the values into the script and re-run it. Then usually some more adjustment will be needed, most likely just small corrections where it's easy to add/subtract the values and re-run the processing again.

For extraction of a region, use EXT (example for 5-12ppm in one dimension, add a similar line for the second dimension):

nmrPipe -fn EXT -x1 5ppm -xn 12ppm -sw

4

No.3 Revision

posted Nov 01 '10 at 07:32

Evgeny Fadeev
577●1

The biggest difference that in nmrPipe you get to write scripts, which are plain shell scripts composed of mostly chained calls to nmrPipe (chained through Unix pipes).

For the solvent suppression nmrPipe has these commands:

nmrPipe -fn SOL #low frequency digital filter
nmrPipe -fn POLY -time #polynomial baseline correction in time domain

For the phasing, there is a way to run scripts from nmrDraw (the companion display program) but for me typing the phase values directly into the script works better. I have a default script where phase parameters are set to 0, then I run the script, adjust the phase in nmrDraw, copy the values into the script and re-run it. Then usually some more adjustment will be needed, most likely just small corrections where it's easy to add/subtract the values and re-run the processing again.

For extraction of a region, use EXT (example for 5-12ppm in one dimension, add a similar line for the second dimension):

nmrPipe -fn EXT -x1 5ppm -xn 12ppm -sw