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posted Mar 16 '10 at 14:41

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jkurutz
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There are two other ways that come to mind for establishing hydrogen bondedness and h-bond strength, though they don't identify H-bonded partners. First is measuring H/D fractionation factors. Without going into great detail, one integrates the putatively H-bonded hydrogen in a series of H2O/D2O mixtures. If the hydrogen is only h-bonded with solvent, it will integrate to 0.5 in a 50/50 H2O/D2O mixture. If the H-bond is strong, the hydrogen will be selectively enriched because of differential zero point energies. I haven't kept up on this literature, but you can check out the following references on the subject. It was a hot subject in Madison for awhile. (1) Lin, J.; Frey, P. A. Journal of the American Chemical Society 2000, 122, 11258-11259. (2) Lin, J.; Westler, W. M.; Cleland, W. W.; Markley, J. L.; Frey, P. A. Proceedings of the National Academy of Sciences of the United States of America 1998, 95, 14664-8. (3) LiWang, A. C.; Bax, A. Journal of the American Chemical Society 1996, 118, 12864-12865. (4) Loh, S. N.; Markley, J. L. Biochemistry 1994, 33, 1029-1036. Second, there's this old reference that you may find particularly useful: (1) Gunnarsson, G.; Wennerstrom, H.; Egan, W.; Forsen, S. Chemical Physics Letters 1976, 38, 96-9. The main message is that if you compare 1H and 2H spectra of hydrogen-bonded systems, the chemical shifts of the signals will differ in proportion to their h-bond strength. In principle, if you took 1D 1H and 2H spectra of your peptide in 50/50 H/D2O, you'd observe slight differences between the frequencies of the same residue's amide "H" depending on whether it was 1H or 2H. Never tried it myself, but thought it might be useful.
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posted Mar 18 '10 at 09:05

Evgeny%20Fadeev's gravatar image

Evgeny Fadeev
5771

There are two other ways that come to mind for establishing hydrogen bondedness and h-bond strength, though they don't identify H-bonded partners.

First is measuring H/D fractionation factors. factors. Without going into great detail, one integrates the putatively H-bonded hydrogen in a series of H2O/D2O mixtures. If the hydrogen is only h-bonded with solvent, it will integrate to 0.5 in a 50/50 H2O/D2O mixture.

If the H-bond is strong, the hydrogen will be selectively enriched because of differential zero point energies. I haven't kept up on this literature, but you can check out the following references on the subject. It was a hot subject in Madison for awhile. (1) awhile.

  1. Lin, J.; Frey, P. A. Journal of the American Chemical Society 2000, 122, 11258-11259. (2) 11258-11259.
  2. Lin, J.; Westler, W. M.; Cleland, W. W.; Markley, J. L.; Frey, P. A. Proceedings of the National Academy of Sciences of the United States of America 1998, 95, 14664-8. (3) 14664-8.
  3. LiWang, A. C.; Bax, A. Journal of the American Chemical Society 1996, 118, 12864-12865. (4) 12864-12865.
  4. Loh, S. N.; Markley, J. L. Biochemistry 1994, 33, 1029-1036.

Second, there's this old reference that you may find particularly useful: (1) useful:

  1. Gunnarsson, G.; Wennerstrom, H.; Egan, W.; Forsen, S. Chemical Physics Letters 1976, 38, 96-9. 96-9.

The main message is that if you compare 1H and 2H spectra of hydrogen-bonded systems, the chemical shifts of the signals will differ in proportion to their h-bond strength. In principle, if you took 1D 1H and 2H spectra of your peptide in 50/50 H/D2O, you'd observe slight differences between the frequencies of the same residue's amide "H" depending on whether it was 1H or 2H. Never tried it myself, but thought it might be useful.

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No.2 Revision

posted Mar 18 '10 at 09:05

Evgeny%20Fadeev's gravatar image

Evgeny Fadeev
5771

There are two other ways that come to mind for establishing hydrogen bondedness and h-bond strength, though they don't identify H-bonded partners.

First is measuring H/D fractionation factors. Without going into great detail, one integrates the putatively H-bonded hydrogen in a series of H2O/D2O mixtures. If the hydrogen is only h-bonded with solvent, it will integrate to 0.5 in a 50/50 H2O/D2O mixture.

If the H-bond is strong, the hydrogen will be selectively enriched because of differential zero point energies. I haven't kept up on this literature, but you can check out the following references on the subject. It was a hot subject in Madison for awhile.

  1. Lin, J.; Frey, P. A. Journal of the American Chemical Society 2000, 122, 11258-11259.
  2. Lin, J.; Westler, W. M.; Cleland, W. W.; Markley, J. L.; Frey, P. A. Proceedings of the National Academy of Sciences of the United States of America 1998, 95, 14664-8.
  3. LiWang, A. C.; Bax, A. Journal of the American Chemical Society 1996, 118, 12864-12865.
  4. Loh, S. N.; Markley, J. L. Biochemistry 1994, 33, 1029-1036.

Second, there's this old reference that you may find particularly useful:

  1. Gunnarsson, G.; Wennerstrom, H.; Egan, W.; Forsen, S. Chemical Physics Letters 1976, 38, 96-9.

The main message is that if you compare 1H and 2H 2H spectra of hydrogen-bonded systems, the chemical shifts of the signals will differ differ in proportion to their h-bond strength. In principle, if you took 1D 1H and 2H spectra of your peptide in 50/50 H/D2O, you'd observe slight differences between the frequencies of the same residue's amide "H" depending on whether it was 1H or 2H. Never tried it myself, but thought it might be useful.

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