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hello everyone,

i work on modified amino acids. i have cartesian coordinates for these residues from crystal structures as PDB . i would like to know, how to convert PDB to cyana residue library format.

if anybody wants to know further i can post the pdb coordinates.

asked Jan 05 '11 at 04:27

rajesh%20sonti's gravatar image

rajesh sonti
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updated Jan 05 '11 at 10:03

Evgeny%20Fadeev's gravatar image

Evgeny Fadeev
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2 Answers:
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Hi, here is the link to the CYANA wiki page that Prof. Guentert emailed to me, the document explains how to create a custom residue.

link

answered Jan 06 '11 at 11:08

Evgeny%20Fadeev's gravatar image

Evgeny Fadeev
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According this message on the cyana mailing list

http://dlist.server.uni-frankfurt.de/pipermail/cyana/2011/000164.html

the program olivia is able to generate cyana tolopogy files. The message also contains a link to a preliminary paper with more info on this process

link

answered Jan 13 '11 at 10:03

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eiso
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